rs31899309 SNP Detail

Summary

• ID
  rs31899309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:63322017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG GTCTCATTGC CCATCCTCAC
  R
  GGAGGGAAAG GGGAACCTCA GCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45583446	mCV24479167	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss146443594	ENSMUSSNP4641378	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss321145092	CHEV_4_63064814	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31899309					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63322017 () rs orientation: forward

Symbol	Name	Function Class
Akna	AT-hook transcription factor	Intron
Gm52742	predicted gene, 52742	1654 bp downstream
Rr593542	regulatory region 593542	within coordinates
Rr593543	regulatory region 593543	1065 bp proximal
Tssr42041	transcription start site region 42041	521 bp upstream
Tssr42042	transcription start site region 42042	506 bp upstream
Tssr42043	transcription start site region 42043	494 bp upstream
Tssr42044	transcription start site region 42044	430 bp upstream
Tssr42045	transcription start site region 42045	404 bp upstream