rs31897275 SNP Detail

Summary

• ID
  rs31897275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144130862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA TCTCAGCTAT AACCACGCTC
  R
  CTAGCCCAGA TCTGGTAAGC CCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45582981	mCV24102938	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147823042	ENSMUSSNP6522362	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321408458	CHEV_4_143994195	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31897275					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144130862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pramel13	PRAME like 13			Intron
				mRNA-UTR
Pramel13os	PRAME like 13, opposite strand			within coordinates
Rr604225	regulatory region 604225			86 bp proximal
Rr604226	regulatory region 604226			587 bp proximal
Tssr40137	transcription start site region 40137			542 bp downstream
Tssr44454	transcription start site region 44454			652 bp upstream