rs31894688 SNP Detail

Summary

• ID
  rs31894688
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133964411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACATATGC ATAACAAGAC AACAATACCA CCCTCTTCCA
  CCTCCACCCC AGTACTGGCC TCCTTCTCCC AGAGGCCTAG AACCACTTCC CCTTTGTTTA
  S
  TTCAAAATGC TGCAGTAGCC TTCATCCCCC ATGCCTCTTT TCTTCCCATG TCTTGGGAAA
  CTCTGCTAAG TACGGAGGTG CATAGTTAAA CTGTTAATT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48100287	NES11855050	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C	C	C	G	G		C	C	G	C		G
ss133768882	ENSMUSSNP2093862	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							C
ss321975837	CHEV_6_133937466	CHEVERUD	SCREENING_POP	f	SNP												C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31894688					SNP	G	G	C	C	C	G	C	C	C	G	G	C	C	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48100287	NES11855050	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133964411 () rs orientation: forward

Symbol	Name	Function Class
D6Mit290	DNA segment, Chr 6, Massachusetts Institute of Technology 290	860 bp distal
Rr380154	regulatory region 380154	within coordinates