rs31894684 SNP Detail

Summary

• ID
  rs31894684
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133964171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGAAACCT GAAAGCAAGC ACCTAAGTAA ATCTCTCTTC
  CCCTTAGTAC TGAGTTCTAT CAGGTACATG ATAATAGGTA GGGTGGTCAT TTTGAATTAA
  K
  GATAATTAAC AACCCTCGGG GACAGTAAAA GCTAGTTGGG AGGAATTTCC TAACTGTCTA
  AATTTGTAAA GAAGATGCAC ATTCAGGACA TCACCTCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
ss48100283	NES11855048	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	G	G	T		G
ss133768876	ENSMUSSNP4271504	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G				G
ss321975835	CHEV_6_133937226	CHEVERUD	SCREENING_POP	f	SNP									G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
rs31894684					SNP	T	T	G	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48100283	NES11855048	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133964171 () rs orientation: forward

Symbol	Name	Function Class
D6Mit290	DNA segment, Chr 6, Massachusetts Institute of Technology 290	620 bp distal
Rr380154	regulatory region 380154	within coordinates
Rr639549	regulatory region 639549	1852 bp distal