rs31893966 SNP Detail

Summary

• ID
  rs31893966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137523665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC CCGCCTGCTT ATGAAGGCGG
  Y
  CTGGCCGAGC ACCCGCCGGC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45583119	mCV22547145	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31893966					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137523665 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	mRNA-UTR
Cpgi15139	CpG island 15139	within coordinates
Rr602723	regulatory region 602723	1509 bp distal
Rr602724	regulatory region 602724	within coordinates
Rr602725	regulatory region 602725	25 bp distal
Rr602726	regulatory region 602726	20 bp proximal
Rr602727	regulatory region 602727	89 bp proximal
Tssr1350	transcription start site region 1350	58 bp upstream
Tssr44149	transcription start site region 44149	29 bp upstream
Tssr44150	transcription start site region 44150	within coordinates