rs31893033 SNP Detail

Summary

• ID
  rs31893033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133962235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGACCT TTTCCCTTAA
  ATGGCGAGAT TAGCTCAGCA AAGGAAATGG ATTTGGAGCA TAAGCGCACA CTCGAAGGAA
  ATTATGGGAA GGGCAGGAAA AGGCAAAGGT GAGAGAACTG GGAGCGAGAT TTAGAGGCTG
  GCTCTCGGGA GGCTTCGGTG GAAGTTATTA ATGAGAGGAA ACGGAAGGAA GAGAGTGAGG
  R
  GTTGCGTGTA ATAAGGACAA ACGAGAAAAG CACAAGAGAA GAGCTAAGGT CAGATGAGGA
  GAAAGAATTA AGCCCTGAAA TTGTCTGCTT CCAGAGAGAT ATCATGGGAA CCCCTGAGGG
  ACACTGGCGA GAATAAACTC CAAAATAAAA ACGGATCTGG AAAAAAGAGA GAGATTTTTT
  TTCTTAAGAT TTTTTTTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48100271	NES11855114	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31893033					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48100271	NES11855114	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133962235 () rs orientation: forward

Symbol	Name	Function Class
Rr380154	regulatory region 380154	1368 bp upstream
Rr639549	regulatory region 639549	within coordinates