rs31892787 SNP Detail

Summary

• ID
  rs31892787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107347244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GCTTTTCTGC AAGGGAACTA
  Y
  AAGCCAGGGA AAGCTTCCCA GAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45583034	mCV22676581	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147181009	ENSMUSSNP6913823	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321248468	CHEV_4_107162652	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31892787					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107347244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14542	CpG island 14542	324 bp distal
Glis1	GLIS family zinc finger 1	Intron
Rr597007	regulatory region 597007	293 bp distal