rs31891388 SNP Detail

Summary

• ID
  rs31891388
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135000048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCGTTCGCTG GACAGTCCCG GCGTCTGGCT GCCCGTGGCC TCAGATCCTC
  W
  GCACCGCCTC ACGCCTCGCG CGCGACTCTG AGGGGGTTGC GGTCCCGGCC           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45582378	mCV25366112	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss147543291	ENSMUSSNP3047923	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31891388					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135000048 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	mRNA-UTR
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	153 bp upstream
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	1059 bp distal
Rr601977	regulatory region 601977	1013 bp distal
Rr601978	regulatory region 601978	267 bp distal
Rr601979	regulatory region 601979	55 bp proximal
Rr601980	regulatory region 601980	67 bp proximal
Rr601981	regulatory region 601981	371 bp proximal
Rr601982	regulatory region 601982	1807 bp proximal
Tssr39607	transcription start site region 39607	555 bp downstream
Tssr43972	transcription start site region 43972	1569 bp upstream
Tssr43973	transcription start site region 43973	20 bp upstream
Tssr43974	transcription start site region 43974	within coordinates
Tssr43975	transcription start site region 43975	17 bp downstream
Tssr43976	transcription start site region 43976	44 bp downstream
Tssr43977	transcription start site region 43977	61 bp downstream