rs31891266 SNP Detail

Summary

• ID
  rs31891266
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134601209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT AAAGACTTAT
  TTATTTATTA TTATTTGTAA GTACACTGTA GCTGTCTTCA GACACTCCAG AAGAGGGTGT
  CAGATCCCAT TACAGATGGT TGTGAGCCAC CATGTGGTTG CTGGGATTTG AACTCAGGAC
  CTTTGGAAGA GCAGTCAGTG CTCTTAACCG CTGAGCCATT TCTCCAGCCC CTCGGGAAGC
  R
  TTCTTAACCA GAAGTTCGCT ATCCACCGCG CCAGCTCCCG AGTCTCCATT TAAACCTCCC
  CCCCCTTACT CCTCTGCCTC ATGGTCTGCA TCTTACTGAG TTGTGGGCCT GGTGACACTT
  TTCCCACAGG CCCACATTCC AATTCTTCGC CCCTGCTTCC TCTCCTAAAG CAGAAGGGCT
  GGGTGGTGTT GGATCCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45082088	mCV23638579	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss145511025	ENSMUSSNP1693790	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31891266					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134601209 () rs orientation: forward

Symbol	Name	Function Class
Rr418973	regulatory region 418973	933 bp proximal
Rr418974	regulatory region 418974	1014 bp proximal
Syt2	synaptotagmin II	Intron