rs31890021 SNP Detail

Summary

• ID
  rs31890021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43509843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACAGCAAC AAGCTATGCC CTGGGAAGAG CCATTTCTCT GCTGCTTCTG TGGCCCCTCA
  CTTCCCCTTC ATGAAGTGCA GTATTCAGTG ACCTCTTTGT ACCTGTAATA ATCAAGAACG
  TACACTCCAA GGTGGGAGGA AGCCAGGAAG TGAGGACGCC TATGAGACTT ACCAGTGTGA
  CATTCACAGC ACAAAGTTCA GGGAAGTTCC TCAGGAGCAG GCGGGCAGGC GTGAGTTATT
  AAAGTGAACG CAAAGGCAGT ACAAGTATAA CATACATGAT GGTCTTCTTC AGGAAACCAC
  R
  GCGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGTGTAA ATAGTGATGA GTGAAACGAT GGACCTAGAT
  CTTGAGGGCC AGGCAGCCTG GGAAACTTTC TCCCCTTCAG TTTGCCATTG CTAATTCATT
  TGCAAAGCAA GAGTAATAGA ACTTGAATAA GATTGTATAT TCCCCAGCAT CCTTAGAGGT
  GAGGAACGGG GAAAGACTAT GGGAACCCCA TCCCATGCCC AGGCTTCCAG CTGTAGTCCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45582466	mCV24974100	ABI	CRAMUS_MOUSE	f	SNP	A		G	G
ss146240457	ENSMUSSNP7206710	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31890021					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43509843 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car9	carbonic anhydrase 9			Intron
				Noncoding-Transcript-Variant
Cpgi14193	CpG island 14193			969 bp distal
Gm12454	predicted gene 12454			1059 bp upstream
Rr591016	regulatory region 591016			569 bp distal
Rr591017	regulatory region 591017			1192 bp proximal
Tssr36975	transcription start site region 36975			944 bp downstream
Tssr41426	transcription start site region 41426			1109 bp upstream
Tssr41427	transcription start site region 41427			1090 bp upstream