rs31887529 SNP Detail

Summary

• ID
  rs31887529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148171474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCAGGA GGATCAGAAG
  TTTGTGGCAA TCCTCAGGTA CACAGTAAGT TCAAGGCTAC ACAGTAAGTT AGTACACGAG
  ACCCTGACTC AAATGAATAA AACATATCAG CCCATAAACA TCACATTTTT CTCACCTGTT
  CCTGCGTTTT ATTATTATTT GTTAGTGTGT GGTCCTGGGA TGGAACCCCA GGCCTGGGGT
  R
  GGCTACTCAA ATGTTCTACC ATTGAGACTT GTGCTGTCCT CGTAATTATT CCAGCAGAAT
  AAGGCAGAGC CTGACCTCCA GACTGCCTCC AAGTCCTGCC TGTAATTCTG TCCCTAGATA
  ATGGATCGCT CAAGCCCATT CCTTTGCTCC AATCTCCCTC CTGCTGCTAG CCAGCAGTTT
  AGGAATGGGA AACCGGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45582336	mCV24935121	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss147991931	ENSMUSSNP5899490	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31887529					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148171474 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	Intron
Cpgi15288	CpG island 15288	660 bp proximal
Rr377389	regulatory region 377389	1077 bp downstream
Rr377390	regulatory region 377390	536 bp upstream
Rr604582	regulatory region 604582	659 bp distal
Rr604583	regulatory region 604583	within coordinates
Rr604584	regulatory region 604584	1004 bp proximal
Tssr40250	transcription start site region 40250	1141 bp downstream
Tssr44579	transcription start site region 44579	944 bp downstream
Tssr44580	transcription start site region 44580	1019 bp downstream
Tssr44581	transcription start site region 44581	1041 bp downstream