rs31882129 SNP Detail

Summary

• ID
  rs31882129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137524796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATG TGACCTCATC GGTAAGTTCA
  R
  GGCCGGAACT GGAGCCTGAT GCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45581361	mCV22547122	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
ss147620288	ENSMUSSNP4299704	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss321367539	CHEV_4_137353400	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31882129					SNP	G	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137524796 () rs orientation: forward

Symbol	Name	Function Class
Alpl	alkaline phosphatase, liver/bone/kidney	1101 bp upstream
Cpgi15139	CpG island 15139	783 bp distal
Rr602724	regulatory region 602724	1112 bp distal
Rr602725	regulatory region 602725	1156 bp distal
Rr602726	regulatory region 602726	611 bp distal
Rr602727	regulatory region 602727	1021 bp distal
Tssr1350	transcription start site region 1350	1189 bp upstream
Tssr44149	transcription start site region 44149	1160 bp upstream
Tssr44150	transcription start site region 44150	1124 bp upstream