CAGCCTGACA AACAGTTTGT TGGTGATGGG AACAACTTTC TGGATAAATA CTTGTTGATC ATCTCGTTCC CCAAAAGGCC CTGGGTCAGA GAAGAAAGGG ACAAGAGTGA GGAATGGTTT CATTCTATAA AAGCACACTG ATACTGACAC TCCTCTTCCC AGCAGCTCTC ATGCCTGCTG TGCACCAGAC CTATGCCAGC R TCACACACAA GCTCAAGGCC GAAGCAGGTC AATCTGCACT CGATTTCACA GGAGCAATGC ACAATGTTTC TTTTTAAAAT ATTTATGTAT GTGTCTCTGT TAGTGTGTGT GAGTGTCTCT GTGTGTGTGT CTCACTGTGC CCACAATTGG TTGTAAGGTT TATATACTAC AGAATGAAAC ACCAAGAGGG TGGGCCTGAC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45080270 | mCV24893783 | ABI | CRAMUS_MOUSE | f | SNP | A | G | G | ||||||||||||
ss51420054 | NES14449589 | PERLEGEN | MM_PANEL2 | f | SNP | A | G | G | G | G | G | G | G | G | G | G | G | G | G | |
ss146483171 | ENSMUSSNP5159135 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | G | G | ||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31881642 | SNP | A | A | G | G | G | G | G | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51420054 | NES14449589 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr1:188709025 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Kctd3 | potassium channel tetramerisation domain containing 3 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr425733 | regulatory region 425733 | 1461 bp proximal | ||||||
Tssr15705 | transcription start site region 15705 | 1576 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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