rs31881642 SNP Detail

Summary

• ID
  rs31881642
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188709025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTGACA AACAGTTTGT
  TGGTGATGGG AACAACTTTC TGGATAAATA CTTGTTGATC ATCTCGTTCC CCAAAAGGCC
  CTGGGTCAGA GAAGAAAGGG ACAAGAGTGA GGAATGGTTT CATTCTATAA AAGCACACTG
  ATACTGACAC TCCTCTTCCC AGCAGCTCTC ATGCCTGCTG TGCACCAGAC CTATGCCAGC
  R
  TCACACACAA GCTCAAGGCC GAAGCAGGTC AATCTGCACT CGATTTCACA GGAGCAATGC
  ACAATGTTTC TTTTTAAAAT ATTTATGTAT GTGTCTCTGT TAGTGTGTGT GAGTGTCTCT
  GTGTGTGTGT CTCACTGTGC CCACAATTGG TTGTAAGGTT TATATACTAC AGAATGAAAC
  ACCAAGAGGG TGGGCCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45080270	mCV24893783	ABI	CRAMUS_MOUSE	f	SNP		A	G						G
ss51420054	NES14449589	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G	G	G	G	G	G
ss146483171	ENSMUSSNP5159135	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31881642					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51420054	NES14449589	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188709025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr425733	regulatory region 425733			1461 bp proximal
Tssr15705	transcription start site region 15705			1576 bp downstream