rs31880488 SNP Detail

Summary

• ID
  rs31880488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108288776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATCCCAGC ACTCCCCCCA CTCCCAAACC TCCTGTTTCT
  GAGGGAGGAA TCCAAGGTTC AAGAGCTAGA GGAACCTGTT CGAAGTCCAT GTTAACAGGT
  W
  CAAAGATAAA CTTAGGTTTT TGTTGTTGTG ACACCCAAAC TCTGCTCAGT ACTCTGGCTG
  TGGACAAGTT GAATTTGGGG TGCCCAAGAG ATGCAAGTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45581724	mCV22675515	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss147187436	ENSMUSSNP6653176	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31880488					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108288776 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	within coordinates
Rr597185	regulatory region 597185	192 bp distal
Rr597186	regulatory region 597186	within coordinates
Rr597187	regulatory region 597187	1811 bp proximal
Tssr38291	transcription start site region 38291	197 bp downstream