rs31879761 SNP Detail

Summary

• ID
  rs31879761
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138462567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TAGCAGGGCT TTAGCCCAGC
  K
  ATTCTCAACC TTCTTAATGC TGTGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45580456	mCV24059885	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss147655598	ENSMUSSNP3935883	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
ss321376622	CHEV_4_138291171	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31879761					SNP	G	G	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138462567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57720	predicted gene, 57720			within coordinates
Pla2g2c	phospholipase A2, group IIC			Intron
Rr603004	regulatory region 603004			641 bp proximal
Rr603005	regulatory region 603005			715 bp proximal
Rr603006	regulatory region 603006			1744 bp proximal
Rr603007	regulatory region 603007			1901 bp proximal
Ubxn10	UBX domain protein 10			Intron
				Noncoding-Transcript-Variant