rs31878244 SNP Detail

Summary

• ID
  rs31878244
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135675502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACTCATC CTTGGCTGTC
  TGGACTCAAT TAGTAGACCA GGCTGGCTTT GAACTCACAG AGATCTACTT GCCTCTGCCT
  CCCAAGTCCT GGGATTATTA AAGGGATTAA AGGCATGCAC CACCAGGTGA GCTATCTGAC
  TTGGGTCTGA GAACCCTACT CAGATCTTCT GTGGAGCCAT CTCTTCGACC CTGGGCTTTT
  W
  AAAAATTTCT CACATATCTC AGGCTGACCT CAAGTTTGCT GTGTAGCAAC TTGAAAGCAG
  CCATGAGCTT CTGATTCCCC CTGCTTCCAT CTCCCAAGCG CTGGGCCTCA GGCCTCGGGC
  CGCGAGCCAC CACACCTGGC TGGGTTGTTG TGTTTAGAGC TGTGTGCTGG AGGAAGTGGA
  ACTAAGTTCA CTGTGTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45581313	mCV22566128	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31878244					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135675502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15085	CpG island 15085			899 bp distal
Gm69275	predicted gene, 69275			1814 bp upstream
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr602211	regulatory region 602211			1825 bp distal
Rr602212	regulatory region 602212			1733 bp distal
Rr602213	regulatory region 602213			756 bp distal
Rr602214	regulatory region 602214			48 bp proximal
Rr602215	regulatory region 602215			605 bp proximal
Tssr39660	transcription start site region 39660			1696 bp downstream
Tssr39661	transcription start site region 39661			225 bp upstream
Tssr44007	transcription start site region 44007			1809 bp upstream