rs31877444 SNP Detail

Summary

• ID
  rs31877444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59836472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTC ACTTTGTAGA CCAGGCTGGC
  Y
  TCAAACTCAG AAATCTGCCT GCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45580029	mCV24717967	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146403511	ENSMUSSNP4164064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31877444					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59836472 () rs orientation: forward

Symbol	Name	Function Class
Rr593157	regulatory region 593157	846 bp distal
Rr593158	regulatory region 593158	157 bp proximal
Rr593159	regulatory region 593159	1265 bp proximal
Snx30	sorting nexin family member 30	Intron