rs31874815 SNP Detail

Summary

• ID
  rs31874815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150062865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA GCTCAAGGCC TGTCAGGCTG
  Y
  GGAGGAGGCC CTCCTGGGAG AGCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45579880	mCV24959939	ABI	CRAMUS_MOUSE	f	SNP		T					C	C
ss46710210	NES11013466	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C		C	C	C	C	C	C	C	T
ss148044538	ENSMUSSNP5884130	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31874815					SNP	C	T	C	T	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46710210	NES11013466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150062865 () rs orientation: forward

Symbol	Name	Function Class
H6pd	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	1067 bp downstream
Rr398875	regulatory region 398875	1599 bp upstream
Rr605129	regulatory region 605129	within coordinates
Rr605130	regulatory region 605130	493 bp proximal
Rr605131	regulatory region 605131	1265 bp proximal
Tssr44702	transcription start site region 44702	1910 bp upstream
Tssr44703	transcription start site region 44703	1634 bp upstream