rs31873263 SNP Detail

Summary

• ID
  rs31873263
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152410062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGCGTC CTCCTGACTC
  TGCCTCCTGA GAGGTGGGAT TAAAGGCGAG AGCCACCAGG CCTGGCTGAC ATCGGGGATC
  CTAAACTTCT CTGTGATCAA AAAGGGATTG CCCCAGTTCT CCTTAAGATA CTTTGTTCGA
  TTCTTATCCG GCCAGGTGGT GATTTGTTTA GGGAACGTCC GTCTTAGTTC TTCAAGACTT
  S
  CAAAAGTAGA GCTGACCCCT TTATTTCTCT TTGGGCTCGT CCAGTCTCCC TGAGTCATTC
  GCAGTGGGAC AGCCCGTCTG ACTCCTCCCT TTCCCGACAG CCGACTTCGC CCTGGGAAAA
  GCAATAGCTG GCCGATCGTT ACTTAGGTGG CAGGGAAGGG CGATCGAGAA GCAAGGGCTG
  ATCGATTGAA GTTGCCTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45579679	mCV23462463	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss148080840	ENSMUSSNP6588880	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31873263					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152410062 () rs orientation: forward

Symbol	Name	Function Class
9430083M05Rik	RIKEN cDNA 9430083M05 gene	880 bp upstream
Cpgi15411	CpG island 15411	within coordinates
Rpl22	ribosomal protein L22	Intron
Rr398901	regulatory region 398901	within coordinates
Rr605841	regulatory region 605841	within coordinates
Rr605842	regulatory region 605842	275 bp proximal
Rr605843	regulatory region 605843	679 bp proximal
Tssr40547	transcription start site region 40547	226 bp upstream