rs31872364 SNP Detail

Summary

• ID
  rs31872364
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123049957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGAATGG GAAAGCTGTC
  AACTGTCTTC AGACAGCCCA CAGGAAGCAT CTGCTATGGC CAGGCTGAAG AAGGATTGCT
  GGGTGATGCT CATAAACTCA GATAACCCAA AGGAAGGAGC CAGCCCCCTC TTCCTCCCCA
  GTCTCCTCCT ATCTGCTCAC TAATGGGAGC CTGCTTGGGC AAGGCAGGGA CTTGCAGAGT
  M
  CCTGCCCCAA TAGAGTAGAC ACAAGTGGTT TGGAGCTAAT AGATGACAGC TAAATAATAA
  TTAGCTCAGC ACATTGCTTT GTGTGTTCAG TCATTAGCTC TTCTCTTCAC ATATTTAACT
  TCCAAAACTC AACAACAACA ACAAAACAAA AAACAAACAA ACAAAAAAAC AACACTGACA
  GGTTTCATTT GTCTGCCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45579851	mCV22631165	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A	A
ss147362166	ENSMUSSNP2425939	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		A
ss321289767	CHEV_4_122833407	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31872364					SNP	C	C	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123049957 () rs orientation: forward

Symbol	Name	Function Class
Rr599058	regulatory region 599058	829 bp distal
Rr599059	regulatory region 599059	947 bp distal
Rr599060	regulatory region 599060	360 bp distal