rs31870878 SNP Detail

Summary

• ID
  rs31870878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135659784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTCTGTA AGAGCTGTTG CTTGAGGAAC
  CAGAGGTAGC CTGAGTCCTG CCAGGAGCTC ACCTACTGTT TCCAGTTGTT AGGATTGTAT
  ATGGTAATGA CATGGCTTGG ACTACGTCGC TCCCCAGGAA TTTGTCTGAC GTCAGTGTGG
  R
  GTAATTCCCA TGTATGGTAA AGTGTGTAAA TACGAGGCAG CTAGTGTTTC CAGACTCTGG
  TATTTCCAGA GCTGTCCAAA GCTGTGCCTG AGGAAGAAAT AGAAGGCTCA CAGCTGCAGT
  GCAGCCCAGC CGGCAAGCTG GTCCTCACCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45078771	mCV23623722	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss145544224	ENSMUSSNP2228178	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss319992768	CHEV_1_137628623	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31870878					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135659784 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Gm70721	predicted gene, 70721			1543 bp upstream
Rr419255	regulatory region 419255			1554 bp distal
Rr419256	regulatory region 419256			1053 bp distal
Rr419257	regulatory region 419257			within coordinates
Rr419258	regulatory region 419258			1989 bp proximal