rs31870423 SNP Detail

Summary

• ID
  rs31870423
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:97202441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG GTTGTTTTCT TAGTTTCTGA
  W
  GTACAAAATA TCATTGATTT ATAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46613395	NES10429105	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	T	A	T	A	T	T	A		A	A	T		A
ss148886273	ENSMUSSNP4991582	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						T
ss321619933	CHEV_5_97483601	CHEVERUD	SCREENING_POP	f	SNP												T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31870423					SNP	A	A	A	T	T	A	T	A	T	T	A	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46613395	NES10429105	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:97202441 () rs orientation: forward

Symbol	Name	Function Class
Bmp2k	BMP2 inducible kinase	Intron
Rr399178	regulatory region 399178	1138 bp upstream
Rr615014	regulatory region 615014	1089 bp proximal
Rr615015	regulatory region 615015	1273 bp proximal