rs31865835 SNP Detail

Summary

• ID
  rs31865835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152421711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTGAG AATCAGAACC
  AGGGTTAATG GTGTATGTGT ACCTCTTCAT ACCTGGGCGC ATGTGTGGGG ATGGCGGAGG
  CTTTCTGGTG TTGAGAAATA TGTTACAAGT TTTTCTGATG TGGGACAGAA AAAGCCTTTG
  AAAAGGCTTA ATGTTCAACA ACAGAAGTCT TAGGGGCTGG TAATGGAGAG TGGGCATATT
  Y
  GATTGAGTTT GGGATTTTCT TTCCTGGACT CTTAGTGGTC ATGGAGACAA GTGATCTGGA
  GAGAGCCAGC AAGCCCTCCC AGGGAGGATG CAACTCAAGC CTCAGCAGTC GGAGGCTCCC
  CCTGGCAGCA GACAGCCCAG GAACCATTTG GATCCTTAGC CACCTTCCTC CTGCTAGCTG
  GTCTTTCTGC CTTGTGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45579386	mCV23462798	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148080969	ENSMUSSNP4687507	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321434225	CHEV_4_151711363	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31865835					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152421711 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	1397 bp upstream
Cpgi15412	CpG island 15412	973 bp proximal
Rr605852	regulatory region 605852	946 bp proximal
Rr605853	regulatory region 605853	1644 bp proximal
Tssr40549	transcription start site region 40549	1365 bp upstream
Tssr40550	transcription start site region 40550	1463 bp upstream
Tssr40551	transcription start site region 40551	1561 bp upstream
Tssr40552	transcription start site region 40552	1660 bp upstream
Tssr40553	transcription start site region 40553	1720 bp upstream