rs31863997 SNP Detail

Summary

• ID
  rs31863997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148643595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC TCTTGTTAGT TTAAAAAAAT
  R
  TATTATTTTC GTCGCTAATT TGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45579192	mCV24946570	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148011388	ENSMUSSNP458047	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321421181	CHEV_4_147933247	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31863997					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148643595 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15305	CpG island 15305			195 bp distal
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Mtor	mechanistic target of rapamycin kinase			1455 bp downstream
Rr398859	regulatory region 398859			615 bp downstream
Rr604703	regulatory region 604703			666 bp distal
Tssr40280	transcription start site region 40280			669 bp downstream
Tssr40281	transcription start site region 40281			638 bp downstream
Tssr40282	transcription start site region 40282			392 bp downstream