rs31863825 SNP Detail

Summary

• ID
  rs31863825
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGTGGA CTAATTAATG
  CCCAGGCATT CACTGAACAC ACGGATAAAC TGAGCTCTGT GCTTGGTACT GAGGTTCAAT
  CAAAGCAGAA ACATGTCTGT AGTTACTACA GGGGCTTGTA GGCTATATAT CCCCTTAAAA
  CAGAAATATC ACACTATGAA TAAAAGTAGG GAGACACTGA AAAATTAAGG ACTTAAAAAC
  K
  AACACAATTG GCAGAGTGGT AAAACATCTC AGGAAGGAGT CTTGTGTGAG CTAAGTTGTA
  TAGAAGGAGC AGCGCTTAGG TCAGGTGAAA GGGACTGACC CTGAGAAGGA GCCCCACAGA
  CTTGCTGAAC TAGGAGTCAG ACTTTGTAGA AAGTGATTTT CTTCAGCTTC CTCCTGTTCC
  ACGAAAGGCA TGTCACTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45578882	mCV22849041	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss147068276	ENSMUSSNP6990008	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
ss321216041	CHEV_4_95562917	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31863825					SNP	G	G	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784463 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			687 bp distal
Rr595486	regulatory region 595486			162 bp proximal
Rr595487	regulatory region 595487			1082 bp proximal
Rr595488	regulatory region 595488			1105 bp proximal
Rr595489	regulatory region 595489			1238 bp proximal