rs31858723 SNP Detail

Summary

• ID
  rs31858723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:94254433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGGA GAGAGAGAGA GAAAGGGAAG AAAAGAAAAA GAAAAAGAAA
  AAGAAAAAGA AAAAGAAAAA AGAAAAGAAA AAGAGAAGAG AACGAACTCA CTCCAGAGTA
  ACAATAGCTG TACAACAAGG ATATGAGGAA CAGAGGGTAA ACATCACACC CCAGGAGCAG
  Y
  CTATCACCCC AGAGGCCCCT ACCTAGGCTT GACATGGCTT GGCTAAGGAA GGGACTAGGA
  TCCCAGAAGA GCTGTAGTGA AACAAAACAG CTGGGCTGAG GCACGGTCAA GAACAGGCTG
  GCAGCTATGG ATCCTCCAGC TGTGGCAGCA TGAATCACCT CAATTGGAAG CAAAGAAAAG
  GGAGTAATTC TAAACTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49783049	NES12405253	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31858723					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49783049	NES12405253	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:94254433 () rs orientation: forward

Symbol	Name	Function Class
Gm6092	predicted gene 6092	359 bp downstream
Gm61740	predicted gene, 61740	within coordinates
Tssr163800	transcription start site region 163800	961 bp downstream