rs31857036 SNP Detail

Summary

• ID
  rs31857036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148250776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGG GCAGTCGCTT CTAGAATGTA
  Y
  GATCCGAGGG GGTATGGGGC TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45578347	mCV24937931	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss147994783	ENSMUSSNP2077492	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321417763	CHEV_4_147540428	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31857036					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148250776 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15296	CpG island 15296			1235 bp distal
Cpgi15297	CpG island 15297			within coordinates
Fbxo2	F-box protein 2			mRNA-UTR
				Noncoding-Transcript-Variant
Gm68449	predicted gene, 68449			within coordinates
Rr604610	regulatory region 604610			1888 bp distal
Rr604611	regulatory region 604611			928 bp proximal
Rr604612	regulatory region 604612			1901 bp proximal
Rr604613	regulatory region 604613			1933 bp proximal
Tssr44601	transcription start site region 44601			47 bp downstream