rs31856213 SNP Detail

Summary

• ID
  rs31856213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138452637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC CTGGACCGCA AGCTGAATTG
  R
  ACTAGGGCAC GGAGGGCGGA GGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45578512	mCV24059831	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss147655263	ENSMUSSNP1525130	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	A
ss321376518	CHEV_4_138281241	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31856213					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138452637 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pla2g2c	phospholipase A2, group IIC			Intron
				mRNA-UTR
Rr602997	regulatory region 602997			1552 bp distal
Rr602998	regulatory region 602998			982 bp distal
Rr602999	regulatory region 602999			524 bp distal
Rr603000	regulatory region 603000			within coordinates
Rr603001	regulatory region 603001			10 bp proximal
Rr603002	regulatory region 603002			390 bp proximal
Tssr39875	transcription start site region 39875			17 bp downstream
Tssr44173	transcription start site region 44173			68 bp upstream
Tssr44174	transcription start site region 44174			59 bp upstream
Ubxn10	UBX domain protein 10			Intron