rs31852883 SNP Detail

Summary

• ID
  rs31852883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135495718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA AGGTAGTGGT
  TCTAGGACAA GACTACATAG TAAGACTCTG TAAACAAAAA ACAAAAATAA GAGCCGGGAA
  GTGGTGGCGC ACGCCTTTAA ACCCAGCACA TGGAAGGCAG AGGCAGGTGG ATTTCTGAGT
  TCGAGGCCAG CCTGGTCTAC AGAGTGAGTT CCAGGACAGC CAGGGCTACA CAGAGAGAAA
  Y
  CCTGTCTCGA AAAAAACCAA AAGGGGGAAA AAAAAAAAAG CAAAACTAAA AACAAAAACA
  AAACAAAAAA CCAAAACAAC AAAAAAATAA TAATAAGTAT ATAGATAGAC AGGCTGGCAG
  ACAGATAGAT AGAAGGAATA GAATATCAAT ACATCCCAGG AGATTAACCA TAGAGGCATA
  GGCCTGTGAT TCCTGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45578144	mCV22670685	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147550463	ENSMUSSNP5897652	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31852883					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135495718 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Myom3	myomesin family, member 3			Intron
				Noncoding-Transcript-Variant
Rr602132	regulatory region 602132			532 bp proximal
Rr602133	regulatory region 602133			626 bp proximal
Rr602134	regulatory region 602134			947 bp proximal