rs31852579 SNP Detail

Summary

• ID
  rs31852579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124924141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTCACA GGAACCGGAC
  AAGACTGTCT ACTGCACAAG GTGAGCTGCC TGAGAGCAAA CTGCAGTGCT CCAAACACAA
  ACAATTGGGG GATCCAGGGA GGGGTCTGAG TCAGGCGGCT GTGCTTTCGG GAGTTTTCGT
  TTAGTTGGTT TTGGATTTTG TCTTTTAGCC GGGGAGCTGC ATTGGACTAT TTGCTCTGTG
  M
  TCTCATTTAG TGTCCTCGTT AGTTTCTGTC AGCTTGATAC AAGCTAGGAA TCATCTGAGA
  AGGGTTCCTT CATGGGGATG AAGGTCTCAA TTGACAAAAT GTCTCCATCA TATTGGCCTG
  GGGCATAATC TTGCTTAAAT GGTTGATATG GGAGGGATCC AACCCACATG GACAGTACCA
  CCTCTGGGCA GGTTGTATAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47595910	NES11178395	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	A	C	C	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31852579					SNP	C	C	A	C	C	A	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595910	NES11178395	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124924141 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	within coordinates
Rr672636	regulatory region 672636	803 bp distal
Rr672637	regulatory region 672637	265 bp distal
Tssr80021	transcription start site region 80021	279 bp downstream
Tssr80022	transcription start site region 80022	248 bp downstream