rs31851195 SNP Detail

Summary

• ID
  rs31851195
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135000190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTGCTC GTTCGCTGGA
  CAGTCCCGGC GTCTGGCTGC CCGTGGCCTC AGATCCTCAG CACCGCCTCA CGCCTCGCGC
  GCGACTCTGA GGGGGTTGCG GTCCCGGCCG CTTCAAACCG CTGGGCGGAG CCCTATGGGC
  GGGGCGTGGG CGGAGCAGTG GCCAGGATCC TGCAGGGGTG GGGGGGAAAT GGGCGGGCCA
  S
  AGCTGGGGGC GTGGCCTCAG GCGAGGAAGA CAGCGGAGCG CTCTAGCTTC CACGGACCGA
  CCACTAGGGA GCCTGGAGGG CGCTGGGGGC GCGGCCTAGG CTGGGCAGCG CGGATTGGCC
  GGGAGGTCCC CCCGAAGCCA CGCCCCTCAG GGGGTGGGCG GGGAAGGTCC CTGGAGCCGG
  AGCCTGACAC CGCCTCTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45577856	mCV25366110	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss147543296	ENSMUSSNP2783744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31851195					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135000190 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	119 bp upstream
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	11 bp upstream
Rr601975	regulatory region 601975	76 bp distal
Rr601976	regulatory region 601976	1201 bp distal
Rr601977	regulatory region 601977	1155 bp distal
Rr601978	regulatory region 601978	409 bp distal
Rr601979	regulatory region 601979	66 bp distal
Rr601980	regulatory region 601980	within coordinates
Rr601981	regulatory region 601981	229 bp proximal
Rr601982	regulatory region 601982	1665 bp proximal
Tssr39607	transcription start site region 39607	697 bp downstream
Tssr43972	transcription start site region 43972	1711 bp upstream
Tssr43973	transcription start site region 43973	162 bp upstream
Tssr43974	transcription start site region 43974	132 bp upstream
Tssr43975	transcription start site region 43975	106 bp upstream
Tssr43976	transcription start site region 43976	87 bp upstream
Tssr43977	transcription start site region 43977	60 bp upstream