rs31850092 SNP Detail

Summary

• ID
  rs31850092
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124923534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGACTG TGGACCAGAT
  CACCTGTGTT TCTGGTCGTA GGGACTCAGG ATGGAGGAGC TGCAGCTCCA CAAGAAAGAT
  GAGGCAGTCT AAACTGTTTA CCTCTAACGA CTATGTGGGA CCTTGTTATG CCCCAGACTG
  GACAAAATGG GTCCTGGCTT GGGGTGCAGA CGGACTTTAA CTACCTATAC CCATAGCTGG
  M
  AATGCTTTGC CTCACAGGGG AGCCTTATTC CAGGTCCAGA AAACAAAGCT GACACAAACT
  TTCATCGCTG CACCTGCCTC TAGCTCTGAA AGAACTAAGT AAGGTCAGGT TTGTATACAA
  AGTAGCCCAG GGCTAGTGCC CTGCCCAGTC AGAGCTGCTC AGGTTACTAC AGCTTTGTGT
  TCTACAAGAA AGCAACCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47595883	NES11178386	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	C	A	A	C	C	C		C	C	C		A
ss322856626	CHEV_8_126720695	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31850092					SNP	C	A	A	C	A	A	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595883	NES11178386	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124923534 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	within coordinates
Rr672636	regulatory region 672636	196 bp distal
Rr672637	regulatory region 672637	66 bp proximal
Tssr80021	transcription start site region 80021	310 bp upstream
Tssr80022	transcription start site region 80022	344 bp upstream