rs31849381 SNP Detail

Summary

• ID
  rs31849381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75910939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTGTCA GATCTCCATT
  CATTAACACA CACACACCAA AATATAGTGA TAAAAGAATA TTTTCTTTTT CTCTGACTTA
  AACAATGACC AAGGTCAGTT GCAGAAAACA TTTATCTGTA ACAGGTGTTA TCAACTGATT
  CCATATGCAC CAATGGAAAA TATAATTTTG ATATTTTGAA ATTATAGAAT TCCTTACCTC
  Y
  GAGACTACAT TTTACAAACT AATTGACAAT TCAAATCATA TCTCATTTGT TGCCTGTCAA
  AATTTCTCTC CTTATCTCTA ACACTTAGAG CATTAAGTCA CATCCAAATA ACTCTATCTA
  ACTCAGTCAT TTCCCACTAT GAGGCTTCAA TACCAACAGG TTCAACTAAT AGCTATTAAC
  CAAGGCTGGG TTCTGAGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45577940	mCV24421529	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31849381					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75910939 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594062	regulatory region 594062			533 bp distal