rs31849197 SNP Detail

Summary

• ID
  rs31849197
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTCCTG GGAGCTCTCT
  GCACTCTCTC CCTTCCCTAT GCACTACCCT CTTCTGTTAG GCACTTGGCT GAATTAAAGC
  AGAGACCCAG AAGTGCCATT GGGATGTCAC TGCAGAGTAG AATCTATCGT TTCATGAAGA
  AGACCCGGAG CCTGTCTGAG GGTTCTGTGT GAACCACTTG TTAAGTGCTA TGACTAATTC
  K
  GGGACGATGC CTTCTCCCGG GGCCCACAGG AGCAGGAGGA GGGGGAGAAG CAGGGCCAGT
  GACCCTCCGT GTGTGAGGAG ATGACATCCA GCTGCAGCCT CAGGTCTTGA CTTGAACTGC
  AGCTGCCCAA GGACCAGGGC CAACAGAGGA CCCAGAAACA CCATCTGAGC TATGCTGTGG
  TCCATCCCCC ATCAGGGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47595868	NES11178381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31849197					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595868	NES11178381	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922949 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	343 bp upstream
Rr672636	regulatory region 672636	within coordinates
Rr672637	regulatory region 672637	651 bp proximal
Tssr80021	transcription start site region 80021	895 bp upstream
Tssr80022	transcription start site region 80022	929 bp upstream