rs31849195 SNP Detail

Summary

• ID
  rs31849195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATCTGA GGCAGGAAGG
  AGAGAAGGTT CGAGAAGACA AGGCTCTCTG GGTCAGGTCT CTCCTGGGAG CTCTCTGCAC
  TCTCTCCCTT CCCTATGCAC TACCCTCTTC TGTTAGGCAC TTGGCTGAAT TAAAGCAGAG
  ACCCAGAAGT GCCATTGGGA TGTCACTGCA GAGTAGAATC TATCGTTTCA TGAAGAAGAC
  Y
  CGGAGCCTGT CTGAGGGTTC TGTGTGAACC ACTTGTTAAG TGCTATGACT AATTCTGGGA
  CGATGCCTTC TCCCGGGGCC CACAGGAGCA GGAGGAGGGG GAGAAGCAGG GCCAGTGACC
  CTCCGTGTGT GAGGAGATGA CATCCAGCTG CAGCCTCAGG TCTTGACTTG AACTGCAGCT
  GCCCAAGGAC CAGGGCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47595865	NES11178380	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	C	C	C		C	C	C	C		T
ss322856624	CHEV_8_126720054	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31849195					SNP	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595865	NES11178380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922893 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	399 bp upstream
Rr672636	regulatory region 672636	within coordinates
Rr672637	regulatory region 672637	707 bp proximal
Tssr80021	transcription start site region 80021	951 bp upstream
Tssr80022	transcription start site region 80022	985 bp upstream