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rs31848392 SNP Detail
Summary
  • ID
    rs31848392
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:124922591 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCGAACCTCA GGGAGACATC
    ATTCGGCCCA TAACACCCCA TTTCTCAGAT GGTGAGACTG AGGCAAAAAG CACACAAATC
    ACACAGTGTT TTGACCCAAG CAAACAGTCC CAAGTGTCTA CTGTTCACCT CTACCCCGTT
    GTGCCAGGCT GTCACACTGG GCCATGGCAC TTACTCATCC TGAGACTGCA ATGCTGGACA
    Y
    CAGGAAATGA ATGAGCAGAG ACTCAAAGGT GCAGAAACAG CCAGTTCAGT GTCTCTACCC
    AAGGCTAGAA AAATGAACAA AGAACCTCAG GAGGCCATCT GTCTGATCTG AGGCAGGAAG
    GAGAGAAGGT TCGAGAAGAC AAGGCTCTCT GGGTCAGGTC TCTCCTGGGA GCTCTCTGCA
    CTCTCTCCCT TCCCTATGCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47595862 NES11178377 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T T T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31848392 SNP T T T T T T T T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47595862 NES11178377 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:124922591 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42054 predicted gene, 42054 701 bp upstream
Rr672636 regulatory region 672636 266 bp proximal
Rr672637 regulatory region 672637 1009 bp proximal
Tssr80021 transcription start site region 80021 1253 bp upstream
Tssr80022 transcription start site region 80022 1287 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory