rs31848392 SNP Detail

Summary

• ID
  rs31848392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAACCTCA GGGAGACATC
  ATTCGGCCCA TAACACCCCA TTTCTCAGAT GGTGAGACTG AGGCAAAAAG CACACAAATC
  ACACAGTGTT TTGACCCAAG CAAACAGTCC CAAGTGTCTA CTGTTCACCT CTACCCCGTT
  GTGCCAGGCT GTCACACTGG GCCATGGCAC TTACTCATCC TGAGACTGCA ATGCTGGACA
  Y
  CAGGAAATGA ATGAGCAGAG ACTCAAAGGT GCAGAAACAG CCAGTTCAGT GTCTCTACCC
  AAGGCTAGAA AAATGAACAA AGAACCTCAG GAGGCCATCT GTCTGATCTG AGGCAGGAAG
  GAGAGAAGGT TCGAGAAGAC AAGGCTCTCT GGGTCAGGTC TCTCCTGGGA GCTCTCTGCA
  CTCTCTCCCT TCCCTATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47595862	NES11178377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31848392					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595862	NES11178377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922591 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	701 bp upstream
Rr672636	regulatory region 672636	266 bp proximal
Rr672637	regulatory region 672637	1009 bp proximal
Tssr80021	transcription start site region 80021	1253 bp upstream
Tssr80022	transcription start site region 80022	1287 bp upstream