GCGAACCTCA GGGAGACATC ATTCGGCCCA TAACACCCCA TTTCTCAGAT GGTGAGACTG AGGCAAAAAG CACACAAATC ACACAGTGTT TTGACCCAAG CAAACAGTCC CAAGTGTCTA CTGTTCACCT CTACCCCGTT GTGCCAGGCT GTCACACTGG GCCATGGCAC TTACTCATCC TGAGACTGCA ATGCTGGACA Y CAGGAAATGA ATGAGCAGAG ACTCAAAGGT GCAGAAACAG CCAGTTCAGT GTCTCTACCC AAGGCTAGAA AAATGAACAA AGAACCTCAG GAGGCCATCT GTCTGATCTG AGGCAGGAAG GAGAGAAGGT TCGAGAAGAC AAGGCTCTCT GGGTCAGGTC TCTCCTGGGA GCTCTCTGCA CTCTCTCCCT TCCCTATGCA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47595862 | NES11178377 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs31848392 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47595862 | NES11178377 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr8:124922591 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm42054 | predicted gene, 42054 | 701 bp upstream | ||||||
Rr672636 | regulatory region 672636 | 266 bp proximal | ||||||
Rr672637 | regulatory region 672637 | 1009 bp proximal | ||||||
Tssr80021 | transcription start site region 80021 | 1253 bp upstream | ||||||
Tssr80022 | transcription start site region 80022 | 1287 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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