rs31848389 SNP Detail

Summary

• ID
  rs31848389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGACCAG GCTCTAGGCT
  AGTGATCACT ACAAACATCC TCTATGTCTT CTGTTGGAAC ATTCATAACA AAACCCTGCA
  GGCCAGTGGG GTTTGGTCAA CAGACATCCT CACTGTCCTG AGAGCTGAAA GTCCAAGGCC
  TACAGGTGAG AAGGCTGTTT TCCCCTCAGG CTGGTGACTG CCCTCTAATG CCCTGGGACA
  Y
  TGTTCCTCTG TGTGTGTGTT TGTATCCTGA TCTCTTCCAA TGAGAACCCC AGTCACCCTG
  GATTAGGGGG TACCCCAAGG ACCTCACACT AGCAGACAAT TCCTGCAAAG ACCCCGTCTC
  CAAATACAGT CACATTCTAA GCTCCTGAAG GCTCAAGCCT TCAGCATGCG AACCTCAGGG
  AGACATCATT CGGCCCATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47595859	NES11178464	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31848389					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595859	NES11178464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922223 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	1069 bp upstream
Rr672636	regulatory region 672636	634 bp proximal
Rr672637	regulatory region 672637	1377 bp proximal
Tssr80021	transcription start site region 80021	1621 bp upstream
Tssr80022	transcription start site region 80022	1655 bp upstream