rs31848386 SNP Detail

Summary

• ID
  rs31848386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACAGACAT CCTCACTGTC CTGAGAGCTG AAAGTCCAAG
  GCCTACAGGT GAGAAGGCTG TTTTCCCCTC AGGCTGGTGA CTGCCCTCTA ATGCCCTGGG
  R
  CACTGTTCCT CTGTGTGTGT GTTTGTATCC TGATCTCTTC CAATGAGAAC CCCAGTCACC
  CTGGATTAGG GGGTACCCCA AGGACCTCAC ACTAGCAGAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47595856	NES11178463	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31848386					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595856	NES11178463	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922220 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	1072 bp upstream
Rr672636	regulatory region 672636	637 bp proximal
Rr672637	regulatory region 672637	1380 bp proximal
Tssr80021	transcription start site region 80021	1624 bp upstream
Tssr80022	transcription start site region 80022	1658 bp upstream