rs31847500 SNP Detail

Summary

• ID
  rs31847500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG GTCAACAGAC ATCCTCACTG
  Y
  CCTGAGAGCT GAAAGTCCAA GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47595850	NES11178461	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T	T	T	T	T	C	T	C	C	T
ss145843924	ENSMUSSNP7040265	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31847500					SNP	T	C	C	T	C	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595850	NES11178461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922138 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	1154 bp upstream
Rr672635	regulatory region 672635	1992 bp distal
Rr672636	regulatory region 672636	719 bp proximal
Rr672637	regulatory region 672637	1462 bp proximal
Tssr80021	transcription start site region 80021	1706 bp upstream
Tssr80022	transcription start site region 80022	1740 bp upstream