rs31846671 SNP Detail

Summary

• ID
  rs31846671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124921982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCAGTCT TGCCTGGCAC
  TGACTTGCTC ATTTTAGAAC CAGGTTGCTT TTCTTGTCAA ACCCTGATTA CTGCTGCTGT
  GGCCTTTGGT ACTCGGTGTC CCTGAGTGCC ATAAATGGCA GGTGCTGTGA GTTTTATGCC
  CACGACCCAG TCTAGGCACC TGATGCTCTG AACTGACTTA TTCAGAATTC CAGACTTAGC
  R
  AATGTCTGAT CTAAGAGAGT TGAATTTTAG AGTCAACATA GCCAGACCAG GCTCTAGGCT
  AGTGATCACT ACAAACATCC TCTATGTCTT CTGTTGGAAC ATTCATAACA AAACCCTGCA
  GGCCAGTGGG GTTTGGTCAA CAGACATCCT CACTGTCCTG AGAGCTGAAA GTCCAAGGCC
  TACAGGTGAG AAGGCTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47595841	NES11178458	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A	A	A		A	A	A		G
ss322856622	CHEV_8_126719143	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31846671					SNP	A	G	G	G	A	G	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47595841	NES11178458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124921982 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	1310 bp upstream
Rr672635	regulatory region 672635	1836 bp distal
Rr672636	regulatory region 672636	875 bp proximal
Rr672637	regulatory region 672637	1618 bp proximal
Tssr80021	transcription start site region 80021	1862 bp upstream
Tssr80022	transcription start site region 80022	1896 bp upstream