rs31846143 SNP Detail

Summary

• ID
  rs31846143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148983333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG ATCTATGGCC TTCTCTTGGC
  Y
  CTGCCCTGTG AGCCATGCCT TGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45577731	mCV22999065	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss46698492	NES10930921	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	C	C		C	C	T		T
ss148022618	ENSMUSSNP3736586	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321423637	CHEV_4_148272985	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31846143					SNP	T	T	C	T	C	T	C	T	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46698492	NES10930921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148983333 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Cpgi15314	CpG island 15314	908 bp proximal
Rr604790	regulatory region 604790	1862 bp proximal