rs31839122 SNP Detail

Summary

• ID
  rs31839122
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108185922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAC ATAGCAAAAC CCGGCCCAAA
  M
  AAAGAATTGG AGAGGGAGAT TGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45576997	mCV23295333	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss147187146	ENSMUSSNP1484063	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321252426	CHEV_4_108001330	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31839122					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108185922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coa7	cytochrome c oxidase assembly factor 7			Intron
				Noncoding-Transcript-Variant
Cpgi14556	CpG island 14556			163 bp distal
Rr367666	regulatory region 367666			447 bp downstream
Rr398380	regulatory region 398380			1377 bp downstream
Rr597153	regulatory region 597153			1544 bp distal
Rr597154	regulatory region 597154			575 bp distal
Tssr38289	transcription start site region 38289			545 bp downstream