rs31835486 SNP Detail

Summary

• ID
  rs31835486
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143027675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC CAGTGTCCAT GGAAAGCTTG
  M
  TCACAGGAAT GGTTGGTAAG CTGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45576369	mCV25432297	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss147779147	ENSMUSSNP217164	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
ss321403833	CHEV_4_142891008	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31835486					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143027675 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	1541 bp upstream
Rr604190	regulatory region 604190	1653 bp distal
Rr604191	regulatory region 604191	1051 bp distal
Rr604192	regulatory region 604192	11 bp proximal
Rr604193	regulatory region 604193	1463 bp proximal
Tssr44447	transcription start site region 44447	1815 bp upstream
Tssr44448	transcription start site region 44448	1623 bp upstream
Tssr44449	transcription start site region 44449	1594 bp upstream