rs31835251 SNP Detail

Summary

• ID
  rs31835251
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137394353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG GATGGGAGGG TGGCTTTTCT
  W
  CCTCAGTGGC CTCCAGTGTG CTGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45575870	mCV24784322	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss321366194	CHEV_4_137222957	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31835251					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137394353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15133	CpG island 15133			1610 bp distal
Rap1gap	Rap1 GTPase-activating protein			Intron
				Noncoding-Transcript-Variant
Rr602670	regulatory region 602670			1454 bp distal
Rr602671	regulatory region 602671			518 bp proximal
Rr602672	regulatory region 602672			1394 bp proximal
Tssr44130	transcription start site region 44130			683 bp upstream