rs31834382 SNP Detail

Summary

• ID
  rs31834382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154260767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAAGAGA GAGAGGGGGA
  GGGAGGGGCT GTGTGTAGAG GATTGCCAGG TTTTTTGTAA GTACGCACCA GATTGGAAAG
  CTACTCTGGT CTGTGTGAGT GTGCTTTGTG CTAGGGACTG AGCTCAAAGC CTGGCCATGC
  AGGTCGAACG TTCCCTATTG TTCCTTGGGC AGTGTCAGGT ACTCACCTGC TTCCCAGGCC
  R
  GGTCCAAAGC AGTGGGTCTT GTCTTCGGTC CCACAACTCG CCTTTGTACC CTCTGGTCCC
  TCAGGCTTGA GCGAGCCTGA GTTTTGTGTA TGTTTCCTGC TCTACATTTG CAGATTGCCC
  CTCCGGCTGA GTTTTTCTTA CAGGGCAGGA ACCTTTTTTC CACTTGGTGG GCCTGGAGGG
  CTGTCTTAGG CCTCCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45576060	mCV23470160	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss46763747	NES10935146	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	A	A	A	G	G
ss148098956	ENSMUSSNP654475	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31834382					SNP	G	G	A	A	A	A	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763747	NES10935146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154260767 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr606099	regulatory region 606099	796 bp proximal