rs31833613 SNP Detail

Summary

• ID
  rs31833613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152071556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG ACCTATAAGC AAGACCTGGG
  Y
  GGGGCACAGT GGTGGATACC TGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45575651	mCV24830047	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31833613					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152071556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15381	CpG island 15381	1187 bp proximal
Rr605696	regulatory region 605696	563 bp distal
Rr605697	regulatory region 605697	1008 bp distal
Rr605698	regulatory region 605698	165 bp distal
Rr605699	regulatory region 605699	909 bp proximal
Rr605700	regulatory region 605700	1492 bp proximal
Rr605701	regulatory region 605701	1861 bp proximal
Thap3	THAP domain containing, apoptosis associated protein 3	Intron
Tssr44797	transcription start site region 44797	1851 bp downstream
Tssr44798	transcription start site region 44798	1915 bp downstream