rs31832354 SNP Detail

Summary

• ID
  rs31832354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152362359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCCAAA GACACTCAGT
  TTTGGCCCAG CCTGGCCTGA GACTGTAAGC GAACAGGTGG CTTGTAAGAA AGTTCAGATT
  CAGGGCTGGT GAGATGGCTC AGTGGGTAAG AGCACCCAAC TGCTCTTCCG AAGGTCTGAA
  GTTCAAATCC CAGCAACCAC ACGGTGGCTC ACAACCATCT GTAACAAGAT CTGACGCCCT
  Y
  TTCTGGAGTG TCTGAAGACA GCTACAGTGT ACTTACATAT AATAAATAAA TCTTTAAAAA
  AATAAAATAA AAGAAAGTTC AGATTCTAGG CTGGAGAGAT GGCTCAGTTA AGAACACTTG
  CTACTCTTCC AGACCACCTG TGTTCAGTTC CCAGCATCCC TCAAGTGGCT CAACTGCCTA
  GTTCCAGGGG ATCTGACGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45575822	mCV23461054	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148080258	ENSMUSSNP982762	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321434051	CHEV_4_151652011	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31832354					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152362359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15402	CpG island 15402	1202 bp proximal
Gpr153	G protein-coupled receptor 153	Intron
Rr605819	regulatory region 605819	1069 bp distal
Rr605820	regulatory region 605820	1354 bp distal
Rr605821	regulatory region 605821	within coordinates
Rr605822	regulatory region 605822	193 bp proximal
Rr605823	regulatory region 605823	373 bp proximal
Rr605824	regulatory region 605824	916 bp proximal