rs31828719 SNP Detail

Summary

• ID
  rs31828719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119691974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAAACT TGGCACCTGT
  GGCATTCTGA GCCACACAGC GCCTTCATGT GGACTGCTGT CCCATTCATT GGGTCAGAAT
  GCAGAACAGT GAGGCTGGCT TCTGATTACT GGGTGCCCAT GTCCAGTAGT GACAACCACA
  GATGTTTCTA CGCATTGCCA AATGTCTCTG GGGTAGGAAA GATGCTCCTA TTTGAATGCC
  R
  CTGTGTAGGG GGCTCAATGC TGCTGAGGAC TTGCCAACAA TTTCTGTCTG AGTTTAAGAG
  CCAGAGAATC AGGATGTCTG CTGTGAGATA GAGTCTATTA TGCATGATAG GAAAGCTGCA
  CTCAAGAAAT CTGAAAAAAA ATAAATAAAT ACAGCAGCCT AAACAAAAAC CCGCACAATG
  ACCACATCAA TTGACATGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45575392	mCV25416257	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147336494	ENSMUSSNP5718091	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31828719					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119691974 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			within coordinates
Rr598660	regulatory region 598660			144 bp distal