rs31824337 SNP Detail

Summary

• ID
  rs31824337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689249 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTTGGGCTAA TATCCACATA TCAGTGAGTA CATACTGTGT GTATTCTTTT GTATCTGAGT
  TACCTCATTC ATGATATTTT CAAGTTCCAT CCATTTGCCT GCAAATTTCA TGAAGTCATT
  GTTTTTAATA GCTGAGTAGT ATTCCATTGT GTAAATATAC CACATTTTTT TATCCATTCC
  TCTGGAATGA AGGACATCTG GGTTGTTTCC AGCTTCTGGC TATTATAAAT ATGGCTGCTA
  TGAGCATAGA GGAGCATGTG TCTTTATTAC ATGTTGGAGC ATATTCTGGG TATATGCTCA
  R
  GAGTGATATA GATGGGTCCT CAAGGTAGTA CTATGTCCAG TTTTCTGAGA AACTGCCAGA
  CTGATTTCAG GCAGGGTTGT ACCAGTTTGC AATCCCAACA GCAATGGAGA AGTGTTCCTC
  TTTCTCCACA TCGTCGCCAG CATCTGCTGG CACCTGAGTT TTTAATCTTA GACATTCTAA
  TTGATGTGAG GTGGAATCTC AGGGTTGGTT ATTTTGATTT TCATTTCCTT GAGGACTAAA
  GATGTTGAAC ATTTCTTTAG GTGTTTCTCA GCCATTCGAG TTTCCTCAGT TGAGAATTTT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45574480	mCV23989287	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31824337					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689249 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1656 bp proximal