rs31822202 SNP Detail

Summary

• ID
  rs31822202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:4464716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGGAA AGGCTTATTT
  ACATTCCTCA GACCATAGGC CACTTCCAGA CAAGGCAAGT CCTTGTCACC TCATTCCCTA
  AAGACCAGTT TAAAAGTCAC ACTCTTCTGC CAATCACATT GTGCCTAATG GCTGCAGCTC
  TGAAAATTGT ATAAAAGCTT GCCAAACGGG CTGTGAGGGG TGGTTCTCTC TCCTTTGTGC
  R
  CAGAGTGACC CACCATGCTG GAAAAATAAA ATTCCTCTTG CTTTTGCATC AATCCCCAAA
  TCCGAGTTGT TCACTCAAGG AGTCTCCTCC CTGAGTTAAG TTACTTTCTG GTAAGTTAAG
  GCTCAACAGA GTCTTACAAT AGCAATAAGA GACAAAACAT TTCATTCTTG AAGATGGGGC
  ACTGGCAGAG AAAACCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45574650	mCV27569874	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss145948753	ENSMUSSNP3524503	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31822202					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:4464716 () rs orientation: forward

Symbol	Name	Function Class
Rr588287	regulatory region 588287	within coordinates
Tssr40838	transcription start site region 40838	587 bp upstream